Links 
NemaBLAST - vs EST contigs & genes

Project
Phyla
Data FTP
Accession IDs
Software
Clone Requests
FAQ

NemaGene
Codon Usage Tables
NemaBrowser
Cluster Data FTP
NemaGene FAQ

Function and Expression
GO associations
NemaPath KEGG associations
Intestinal Transcriptome
Nematode Protein Families
Microarray

Enter a GenBank accession ID in the box to the right to fetch the FASTA sequence for the BLAST below (ex. BG232754). Or you can manually enter your sequence in the text box below:

Note: This feature is dependant on the availability of GenBank's web server. If you have trouble retrieving the entry please enter your query sequence by hand below.
Please enter your sequence here (must be in FASTA format)

Select all the species you wish to include in your blast database by selecting individually or by clade from the menu below. Also be sure to enter your query sequence in the window above, either manually or fetch the sequence using the GenBank accession number. Next, choose the version of BLAST you want to run, and select whether or not to filter and mask your query. And be sure to enter your email address in the appropriate text box. Then finally press the BLAST Search button and your job will begin.
Select a BLAST type to use on this query:
Select from the following options:
Filtering:
Masking:
Please enter your email address
(for tracking your query, and emailing your BLAST output)
Must be in the form user@host.edu:

Use these buttons to select an entire clade at once
Use these buttons to select or deselect all databases
Press the BLAST Search button to execute your job
(be sure to enter your email address in the appropriate box above)
Select NemaGene Database(s) to BLAST:

Clade I
Trichinella spiralis
Trichuris vulpis
Trichuris muris
Xiphinema index

Clade III
Ascaris suum
Brugia malayi
Brugia malayi_Annotation
Dirofilaria immitis
Onchocerca flexuosa
Toxocara canis

Clade IVa
Parastrongyloides trichosuri
Strongyloides ratti
Strongyloides stercoralis

Clade IVb
Ditylenchus africanus
Globodera pallida
Globodera rostochiensis
Heterodera glycines
Heterodera schachtii
Meloidogyne arenaria
Meloidogyne chitwoodi
Meloidogyne hapla
Meloidogyne incognita
Meloidogyne javanica
Meloidogyne paranaensis
Pratylenchus penetrans
Radopholus similis
Zeldia punctata

Clade V
Ancylostoma caninum
Ancylostoma caninum_Annotation_and_EST
Ancylostoma ceylanicum
Caenorhabditis elegans_wormbaseV160
Caenorhabditis remanei
Haemonchus contortus
Nippostrongylus brasiliensis
Ostertagia ostertagi
Pristionchus pacificus




Last updated: 07-25-07  

 

Nematode Net v2.0
Copyright Statement

 Genome Sequencing Center
 Washington University
 School of Medicine
 4444 Forest Park Blvd.
 St. Louis, MO 63108 USA