Haemonchus contortus: 3655 partial CDSs (3651 contigs; 2517 clusters; 496278 codons) AMINO ACID FREQUENCIES ====================== F Phe 21366 4.3 % S Ser 31295 6.3 % T Thr 26122 5.26 % N Asn 20627 4.15 % K Lys 33385 6.72 % * stop 0 0 % E Glu 32605 6.56 % Y Tyr 16914 3.4 % V Val 34179 6.88 % Q Gln 18251 3.67 % M Met 12090 2.43 % C Cys 10852 2.18 % L Leu 42854 8.63 % A Ala 36764 7.4 % W Typ 6299 1.26 % P Pro 23039 4.64 % H His 12211 2.46 % D Asp 28144 5.67 % I Ile 27698 5.58 % R Arg 29459 5.93 % G Gly 32124 6.47 % CODON USAGE FREQUENCIES ======================= F Phe TTT 7930 1.59 % F Phe TTC 13436 2.7 % S Ser AGT 4473 0.9 % S Ser AGC 4412 0.88 % S Ser TCG 5379 1.08 % S Ser TCA 6675 1.34 % S Ser TCC 4394 0.88 % S Ser TCT 5962 1.2 % T Thr ACA 7163 1.44 % T Thr ACC 5863 1.18 % T Thr ACG 5319 1.07 % T Thr ACT 7777 1.56 % N Asn AAC 9456 1.9 % N Asn AAT 11171 2.25 % K Lys AAG 17255 3.47 % K Lys AAA 16130 3.25 % * stop TGA 0 0 % * stop TAA 0 0 % * stop TAG 0 0 % E Glu GAG 13364 2.69 % E Glu GAA 19241 3.87 % Y Tyr TAC 8738 1.76 % Y Tyr TAT 8176 1.64 % V Val GTG 9170 1.84 % V Val GTT 10692 2.15 % V Val GTA 6143 1.23 % V Val GTC 8174 1.64 % Q Gln CAG 8544 1.72 % Q Gln CAA 9707 1.95 % M Met ATG 12090 2.43 % C Cys TGT 5363 1.08 % C Cys TGC 5489 1.1 % L Leu CTG 8019 1.61 % L Leu CTC 7689 1.54 % L Leu TTG 8784 1.76 % L Leu CTT 9770 1.96 % L Leu TTA 4099 0.82 % L Leu CTA 4493 0.9 % A Ala GCC 8359 1.68 % A Ala GCA 9438 1.9 % A Ala GCG 5204 1.04 % A Ala GCT 13763 2.77 % W Typ TGG 6299 1.26 % P Pro CCG 4704 0.94 % P Pro CCA 7871 1.58 % P Pro CCC 3602 0.72 % P Pro CCT 6862 1.38 % H His CAC 5087 1.02 % H His CAT 7124 1.43 % D Asp GAC 11227 2.26 % D Asp GAT 16917 3.4 % I Ile ATC 10799 2.17 % I Ile ATT 11412 2.29 % I Ile ATA 5487 1.1 % R Arg CGA 6614 1.33 % R Arg AGA 5176 1.04 % R Arg CGC 4028 0.81 % R Arg AGG 3536 0.71 % R Arg CGT 7464 1.5 % R Arg CGG 2641 0.53 % G Gly GGA 12684 2.55 % G Gly GGT 9600 1.93 % G Gly GGG 3131 0.63 % G Gly GGC 6709 1.35 % # - number of times the codon is observed % - relative aa / codon usage value (usage of a given codon among its redundant set, i.e. the set of codons which code for this codon's amino acid).