Trichuris vulpis: 1000 contigs; 106071 codons AMINO ACID FREQUENCIES ====================== A Ala 7439 7.01 % C Cys 3174 2.99 % D Asp 5214 4.91 % E Glu 6459 6.08 % F Phe 4737 4.46 % G Gly 6196 5.84 % H His 2601 2.45 % * stop 25 0.02 % I Ile 5428 5.11 % K Lys 6794 6.4 % L Leu 9558 9.01 % M Met 2785 2.62 % N Asn 4424 4.17 % P Pro 5066 4.77 % Q Gln 4047 3.81 % R Arg 6468 6.09 % S Ser 7907 7.45 % T Thr 5829 5.49 % V Val 7169 6.75 % W Typ 1350 1.27 % Y Tyr 3401 3.2 % CODON USAGE FREQUENCIES ======================= A Ala GCA 1983 1.86 % A Ala GCC 1930 1.81 % A Ala GCG 1647 1.55 % A Ala GCT 1879 1.77 % C Cys TGT 1073 1.01 % C Cys TGC 2101 1.98 % D Asp GAC 2924 2.75 % D Asp GAT 2290 2.15 % E Glu GAA 3994 3.76 % E Glu GAG 2465 2.32 % F Phe TTC 2494 2.35 % F Phe TTT 2243 2.11 % G Gly GGA 1967 1.85 % G Gly GGC 2060 1.94 % G Gly GGG 681 0.64 % G Gly GGT 1488 1.4 % H His CAC 1293 1.21 % H His CAT 1308 1.23 % * stop TAA 17 0.01 % * stop TAG 1 0 % * stop TGA 7 0 % I Ile ATA 1463 1.37 % I Ile ATC 1513 1.42 % I Ile ATT 2452 2.31 % K Lys AAA 3212 3.02 % K Lys AAG 3582 3.37 % L Leu CTA 829 0.78 % L Leu CTC 1057 0.99 % L Leu CTG 2237 2.1 % L Leu CTT 1781 1.67 % L Leu TTA 926 0.87 % L Leu TTG 2728 2.57 % M Met ATG 2785 2.62 % N Asn AAC 2349 2.21 % N Asn AAT 2075 1.95 % P Pro CCA 1536 1.44 % P Pro CCC 865 0.81 % P Pro CCG 1456 1.37 % P Pro CCT 1209 1.13 % Q Gln CAA 2037 1.92 % Q Gln CAG 2010 1.89 % R Arg AGA 1138 1.07 % R Arg CGA 1148 1.08 % R Arg AGG 856 0.8 % R Arg CGC 1408 1.32 % R Arg CGG 741 0.69 % R Arg CGT 1177 1.1 % S Ser AGC 1779 1.67 % S Ser TCA 1224 1.15 % S Ser TCC 1369 1.29 % S Ser AGT 1092 1.02 % S Ser TCG 1449 1.36 % S Ser TCT 994 0.93 % T Thr ACA 1463 1.37 % T Thr ACC 1346 1.26 % T Thr ACG 1766 1.66 % T Thr ACT 1254 1.18 % V Val GTA 1272 1.19 % V Val GTC 1568 1.47 % V Val GTG 2029 1.91 % V Val GTT 2300 2.16 % W Typ TGG 1350 1.27 % Y Tyr TAC 2134 2.01 % Y Tyr TAT 1267 1.19 % # - number of times the codon is observed % - relative aa / codon usage value (usage of a given codon among its redundant set, i.e. the set of codons which code for this codon's amino acid).