>Minc04059_MiV1A1.short_header.longest_isoform_
--------------------
--------------------
----------------MFYF
HFIFFNLLAFN---------
-----------------SVF
CLNIYLDTYEQLSYKPVQFR
RSRE-----LNSHSTTDVKF
RSHTYNRTFHLKLQPLN-FN
KNVFDDSHIIDVDGIYHSNV
IRPSDFIYEGYLDGDPNSIV
YGTLLDGIFDGYITTG----
------DGKTFTVEKANRYF
DVGQRPIHFHSIVYADEHIT
HNRFIKDPNNGAYHSCALTK
KLHQDMRRLQQSAIVDDDYI
LTENN---------------
-----FNNMTILDLEYYTAN
RTKRSIKTDWKDVGGRRVYE
ARTCTIYLQADHKLYEHIYN
KEGNGDHIRLYFSFVCICPY
FRTREEIVALLYTHIKAVNQ
IYESTNFN--G----IHGIN
FAIKRTTIYTPSTCKG----
--------------------
------------ERAATAGN
PFCEEN--------VDVSNY
LNMNSQKDHSAFCLAYSLTY
RDFIGGTLGLAWVASPSQS-
-TAGGICQKYQRYNEHQRGG
VSRSLNTGIITLVNYGNRVP
PRVSQLTLAHEIGHNFGSPH
DFPLECQPGLPD--------
-GNFIMFASATSGFSFLFTL
LIFYLGDKPNNSKFSQCSIA
NISEVLFEVLGQSPKA----
--------------------
------------FTLGRKKN
CFTDQLKSFCGNQIKEDDEQ
CDCGFTALDCQEMGDRCCTP
--------REGATEK-----
----PGKLCSPSEGLCCNPD
NCSFFAGGDRRPCREDSECQ
HRQFCDG-----SRASCPP-
--------------------
------S------NHKPNGK
PCQDSTKVCHQGSCNGSLCA
HYNLRDCFLTEGRPEDLCQL
ACE-----------------
--------------------
--------------------
--------------------
--------------------
--------------------
------KNGVCLPSVSLPEL
ALANLSQEGR-------SAG
FLLLPPGSPCNN--------
--------------------
--------------------
-----------YLGY-----
------------------CD
IFRKCRSVDSNGPLARLKN-
----------LLFNREAIKE
FTQLVKENWWGCVFVGIVVL
MFMALFVKCCAVHTPSTNPN
KLPPANFSDTLRHPGTLLRR
GHGG---------------V
PSNRPAVSHNRPAPQRNERE
RPSRSTNNHSRSAPTNSRGD
LVARSVGAVPEVVNVTSRNS
ALVAETPLIQSNSIVVPPAD
PPPPYELTDPAPSISAQVPI
LTNQTASPSNAQLVNSSESC
SIINQCEPLPIRLPNAPPP-
VLTTGCSVLPLIPGPPINSD
SQCGPRPGRRKPKPLPQQIK
QQQRKKESVPLSNDKRYKRQ
AK
>Mh10g200708_Contig130_36443..38159_M_hapla.pep_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
-------MSTMCRRR-----
----PGKLCSPSEGLCCNPE
SCSFYPGDDHRPCREDSECQ
YRQSCDG-----ARASCP--
--------------------
-------PS----NHKPNGK
PCQDSTKVCHQGSCNGSLCA
HYNLRDCFLTEGRPEDLCHL
ACEKNGG-------------
--------------------
--------------------
--------------------
--------------------
---------------TFLSL
TKFHTKIIQVCLPSVSLPEL
ALANLSQEGR-------SAG
FLLLPPGSPCNN--------
--------------------
--------------------
-----------FFGY-----
------------------CD
IFRKCRSVDSNGPLARLKN-
----------LLFNREAIKE
FTQLVKRRGHGGVSHNRPAV
NGLQ-----------RSERE
RPSRSLATNSNSRSAPAT--
--------------------
---------------SRGGL
VARS----VVAAPEFG----
------NAASSRNSAFVAET
PLIHSNSMVAP-------PD
PPPPYELTDPAPSIISQVTV
STYQTGLPSSTQAVSSLESF
AITNQCEPLPIRLPNAPPPP
VLTTGCSVLPLIPDPTIGGD
SQCGPKPGRRKPKPLSQPAK
QQRKKESTVPLSNDKRYKRQ
AK
>DY3.7_wormpep204.longest_isoform.pep_
--------------------
--------------------
-------------------M
SSPIRNRLQLVVTLIFCLFF
ENVNGLN-------------
NFIDNFETLNYRATHVANQV
TRRKRSIDSAASHYQEPIGF
RFNAYNRTFHVQLHPIDDSL
FHEDHMSDVDGG-----YAD
IKPSHFLYEGYLKDDPNSHV
HGSVFDGVFEGHIQTG----
------EGRRYSIDKAAKYF
ERDDRPTQYHSIIYRDDEIN
HRKWRVKRDAENLSEQMQGC
GFSSRVRREMTDVQNS----
------GESTDFFTN-----
------------------YM
TMGGRSKRANTLRDHDGLYF
VRTCSLYMQADHKLYEHIRM
KEGNNDPIR-----------
--TREEIVSLFYNHIKAVNE
IYEGTNFN--G----IKGLH
FVIQRTSIYTPDSCDR----
--------------------
------------GRAKTDSD
NPFCEEN-------VDVSNF
LNLNSQRNHSAFCLAYALTF
RDFVGGTLGLAWVASPQFN-
-TAGGICQVHQRYNEGSRGW
VYRSLNTGIVTLVNYGNRVP
ARVSQLTLAHEIGHNFGSPH
DFPAECQPGLPD--------
-GNFIMFASATSGD------
-------KPNNGKFSPCSVK
NISAVLAVVLKSMPVDPTRN
A-------------------
----SPVGIGKRNCFQER--
-----TSAFCGNQIYEPGEE
CDCGFSQADCDQMGDKCCVP
HEARGNGGPGPCKRK-----
----PGAQCSPSQGYCCNPD
TCSLHGKNEEKICRQESECS
NLQTCDG-----RNAQCP--
--------------------
-------VS----PPKHDGI
PCQDSTKVCSSGQCNGSVCA
MFGLEDCFLTEGKADELCFL
ACIK----------------
--------------------
--------------------
--------------------
--------------------
--------------------
-------DGKCTSSVHLPEF
SANRTNFLQN----MRKDKP
GLILHPGSPCNN--------
--------------------
--------------------
-------YKGY---------
------------------CD
IFRKCRSVDANGPLARLKN-
----------LLFNKRTIET
LTQWAQDNWWVVGVGGLVFL
VIMALFVKCCAVHTPSTNPN
KPPALNIYQTLTRPGTLIR-
--------------------
-------------QHRQRHR
AAAGSVPPGPGAQPRS----
--------GAASAPSRTTPS
ARPSAPPLVAP------QVA
VAVPPGVVG-----------
-------PPIPLIATHPGSS
SSTPAVIVLEPPPPYTAADP
GSAMGGPRRGHR--------
------KNKRQTSSDAAGSS
GNGGKKKGK-----------
--
>Mh10g200708_Contig130_38825..39681_M_hapla.pep_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
-----------------MRK
LQQSAILDDEYFPSKHNMSI
LDLQFENMHNDFKQR-----
--------------------
------------VYEAR---
--------------------
--------------------
--------------------
--------------------
--------------------
--TCTIYLQADHKLYEHIYN
KEGNGDHIR-----------
--TREEIVALLYTHIKAVNQ
IYEGTNFN--G----IHGIN
FAIKRTTIYTPSTCKG----
--------------------
------------ERAASTGN
PFCEEN--------VDVSNY
LNMNSQKDHSAFCLAYSLTY
RDFIGGTLGLAWVASP----
--------------------
-------SQSFIAYYYNIYL
LIFLHVRPVESAKNTKGTTN
TSVAELAVR-----------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--
>15304.m00120_BMA1.short_headers.longest_isoform.pep_
--------------------
--------------------
--------------------
MLYVYFRYYVVVFVNCLIVY
LSFSGVDPNNMCVASLLFIS
NILLVDGLSRFVDWYETLSY
EPLAGRRKRSPDGIYAPLSL
QFASHNRSFHLILRSLDEST
SVFSDNFIFDVD---GKGEH
IPMRDFLVHGHDKNDPESTL
YGSFRDGIFDGHIIYG----
------NGESYTIDKIDRYL
HWRHRPKHFHSIIYSDNSIN
FWKQRRKRSLVEN-------
--NQNCGLDYTTQQK-----
------MEILQN--------
------------------SV
IFEDEENEQSYRDGAFDERY
ILESRFKRSAEENDIKTING
KRIYSVRTR-----------
----EEIASLFYNHIKAVNQ
IYESTSFG--G----INGIT
FVIQRISLYTPSTCKD----
--------------------
------------GKPKGVSQ
ENPFCEEN------VDVSNY
LNLNSRKNHSDFCLAYAFTF
RDFVGGTLGLAWVASPNHN-
-TAGGICQQYTKYSEASNFV
YR-SLNTGIITLVNYGNRVP
NRVSQLTLAHEIGHNFGSPH
DYPLNCQPGLPD--------
-GNFIMFASATSGD------
-------KKNNAQFSNCSIA
NITLVLTEVRFENKIHITES
SRKFYPFSVLQRQVLQQRPV
DSEVTLRIGGFGNIGAGKRN
CFREAKSSFCGNQVKEPGED
CDCGYSAEDCQTMKDNCCNP
RQSG---PASRCKRI-----
----HSAQCSPSEGPCCDAS
SCQPYAS--RKTCRAESECL
KQQQCNS-----ESPECP--
--------------------
-------PS----DPKENGL
PCQDSTKVCNDGNCNGSVCA
QVGLKDCFLTVGSPEHLCHL
ACED----------------
--------------------
--------------------
--------------------
--------------------
--------------------
------ENGTCRSSLTLPQF
AIGKYKQSGR------KNKP
GLILLPGSPCNN--------
--------------------
--------------------
-----------YKGY-----
------------------CD
IFRKCRSVDADGPLARLKN-
----------VIFNPKTLYE
VKYWIQVGGGTSGRQAAGHT
E-------------------
--------------------
--------------------
--------------------
--------------------
--------NSERVSSRAAFQ
PTPSAPPLPPP---------
--------------------
-------PTSVLVIEPPPPY
TAAIPGSSIALGGPKRGHR-
--------------------
-------RNRRRNDVEIRAK
NRRN----------------
--
>TS_TRISPI_Contig28.SNAP.26_T_spiralis.071204.pep_
MSTLFTPSCHCHQHFNGQSP
LKFLRRFEKLDYDSSSVSSA
HARFKRSIDSRSDPFPITIS
LKYLDKTFKLKLKPDSSSFS
SSHAFDENGKKKNVDLSFLF
DGQVEGESNSYVYGSLIDGV
FDGHIHIKDSVYHVEKIVKY
DVNQLKPAYHSIIYSGIFEE
NCRSPHVQAKLYGQGEQRCT
YSIDEYSKVDGVCQIFKGMI
QKSILSMFYLFHWALL----
------LSRVGNCDCCMLFF
LNSTPMKTSLSGCRRRDSHL
KMKLRVKRHVDSSASSSCGL
HGRVRRTMQRFQRSAVVEEP
QLFTYGSGHQWTGASRN---
-----ADEAMQPWRKYVEKV
HRDDEELSDRWKRSADGLYD
VRTCTLYMQADQKLWEFVYN
HEGQRNSER-----------
--TRNEILSLFNSHIKAVNT
IYEGTNFN--G----IKGIN
FVVQRTTIFDNNTCPS----
--------------------
------------IVTPDSGN
PFCEEN--------VDVSNF
LNLNSIKNHSDFCLAYALTY
RDFVGGTLGLAWVASPQPSG
HTSGGICEIYKPYSEGSRRV
RR-SLNTGIITLVNYHNRVP
PKVSQLTLAHEIGHNFGSPH
DYPPFCQPGLPD--------
-GNYIMFASATSGD------
-------KVNNNKFSICSVN
NISSVLHEVLRQNPNMPRLG
--------------------
-------SSAKRNCFKRR--
-----ETSFCGNALVEDGEE
CDCGFNQQECRQRGDSCCYP
R-----THGGEAKVR-----
----RKESVATRVASSSPRP
RISFAVRQPNAALINIAKAI
SPVARCQMP----SQTVP--
--------------------
-------------DVKTIRK
SAIMELAAILYATSSAWKNA
LLQKERPKINAYWHARIVQV
GDR-----------------
--------------------
--------------------
--------------------
--------------------
--------------------
-------RSKCISSFLIPAL
QSYYQNNQNR---------R
GILLRPGSPCN---------
--------------------
--------------------
----------DYRGY-----
------------------CD
IFQKCRSVDANGPLSRLKN-
----------LFFNQETLKT
LTQWVQDNWWAAILMGIALL
ILMALFIKCCAVHTPSTNPR
KPPAHSIYETLRHPSTLLR-
--------------------
--------------------
-------SAPSSSAQHR---
--------RHGHHQHHQHHR
HHHRHHRHRRP---------
--------------------
-------SGHRSRRSDQSNA
AAPRISNVIEPPPPYSSAVG
PPRGHRMNRKHG--------
--------RRRQDLIEMRHS
QQQQQQHV------------
--
>Smp_145900_Smansoni.v4h.longest_isoform.pep_
--------------------
--------------------
-------------------M
FSKVRLCLPFIILEIFVICV
QSYNFP--------------
-ESPFFSRYDGLDYSPDSFS
HQHK---RTRRSTSKTNIIL
PINAFGKFFQLVLSPDYDVV
HPNAKLIVGGRE---WTGGL
PAVSDHVVRGYVDGFTHSVV
FGSVIDGVFRGTVSLNKSNL
LHSASKSYDTYFIEPSGYYF
NK---DFPFHSVIYNSLDVK
IPTVGQSRMRRAVQEMDLKF
CGLSYPNIVQEMSKTNIEDR
EKHGNTVFRSNSSFVKSPFS
---RNRGSYFLELQSPFVRS
FKLPHLVNNNSLSYKDGGPN
TRVCNLYLQSDTYLWDHVIN
KRHIQGNRE-----------
-LAVKEITSIFTQHVQTAQL
IYQDAIFRDHSGRLEFRGVS
FRVDRVLINVTEHDCRNRLW
KPKYLQDRNNSYISPTALPR
ETISDHLFLHQPSNTDHLGF
SGAYTDENPFCAPNIDVTNY
LNLHSYNKYDDFCLAYIFTY
RDFSGGTIGLAWVAEVGGAG
----GVCEKHRKMLEGNQNV
FKS-LNTGIVTLLNYGSKVA
TKVSQLTFAHELGHNFGAKH
DNFHENESYGCLP--SIDDV
RGNYIMFASAISGD------
-------KENNNKFSDCSLD
SIAKLLDHVLRGEN------
--------------------
------------NCFLTS--
-----DGPFCGNQLTEKGEE
CDCGFT---RANCHDKCCHP
RD-----SASPCKLVNNVFI
DHAQRTVQCSPTAGVCCT-E
NCQYRPETHMCRP--AGECH
RSSNCSG-----TMSKCPP-
--------------------
------------VDILPDGT
LCQDGTRVCKQGQCIGSICE
RIPGWHECSFTRDKIVVPEL
MCFVG---------------
--------------------
--------------------
--------------------
--------------------
--------------------
------CKQNISGAPCISSF
QLETEILSKYP---------
--------------------
--------------------
--------------------
--------------------
--------------------
--EVKELMGPDIKLAYFSS-
------------FEVFLQFI
VALWISIYQPSWLLWLFLTY
TISG----------------
--------------------
--------------------
--------------------
---------TINHSLG----
--------------------
--------------------
--------------------
-------CAIHEVGHNLVFG
HKYGKANRLYSIFINLPMG-
--------------------
----------LPIAISYRKY
HQAHHR--------------
--
