>TS_TRISPI_Contig15.FG.61_T_spiralis.071204.pep_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--MSFFATVQITCCCFVICQ
SKFARIIRFAGTVSAFKIVK
VFCHFR--------------
-------GKSHVQHYKEISS
AREFQPHPDHFYY---ILGY
NPET----------------
--------------------
--NRLATIQGEIRVGLTYQA
RLPEYKSDNDSCEEEEAARE
TLVWAPNRIADSDLVVFLQA
ARSMAAFAGMCDSGS--TED
GCLAAARDQITINAFNALHR
NDYDTGKALQELVKNPLPLS
ADK-RWSEEET---------
--------------------
--------------------
-------------------A
DLVEYYYLWKKYPSALHQRP
RARHRRAQT-----------
-------------------S
VLRRVKPNGSSR---AASRP
TS-----------SEFCTLC
VIWLIYLLILALLYS-----
---------KNWHHAGKE-R
TLLCTECRLHFKKYGELRPV
VRPRT--------PPSVLFK
PAK--------EELEEMNYT
GGIRTRRSNKDYGSAASRR-
-------HAVTPTAAELEKT
RHAGSSRVSCNGNNDKPLGP
KSPSS--------ASTSSTS
SSITAAELPETKKLPRAKGG
GKKRK---VEKTSPALST--
-------------VDETVST
ATKRSTKKSQATVTAEPTAT
TDSTTSELNNNGAAAS----
--------------------
--------------------
-------DNDDITPDHSSSV
SSPPLSNDRSATPKKLAPSI
EESIDCVVR-----------
-----------GSLIANSP-
---KWKSPNNNGDTTE----
--------------------
--------------------
--------------------
---------KPESSSPALST
ILPVENAEQQLQLIRTNEKA
TIKAASDVSAAVLPSELTSS
HVNVLKEPSSLVLSGLLSRS
SAPSIPAHSLCQNSQAVCTT
TSAITS--------------
--------------------
--------------------
--------------------
---------AACSVIKETVM
LLKEQQPNE-----------
--------QIDSEDDVDYNG
SVLPAAKEPEPKIDDGTECH
RSANAIFRRHWYRGSSNSCS
RTDLIFVP-------LPDSP
LAKKRQKEATLRRQTEIKEE
KKERHAQYLSSSTSTTLTTT
SAQTNLTV------------
--------------------
-TTPSTGLHATASPFGTGLP
NNFNMLPMTTFHAS----SH
DLPALQRLKEYASAAASACT
PGS-PSFHQAALLDPV----
LQYRILSGLYG--PAEKERL
EQELRERQHDLIKRDYELSK
SLFSLSSTAPLSHQQAAAAG
NIGLPGVSPMAGGDARQMLG
--GFPERLAQLYPSNPILRI
EIDRLSAALSAIATQHHTHS
HTHSHTHLHIHPSSASSSGA
PESTTTSSIAATPHPQLWGA
GGAAFPTAAEQLMQQYSTLF
RPAP--GALTALDNGVG---
------------ASHLMASV
PGLPPPGLN----MHAATVL
DP------------------
--------------------
--------LAAERLQQLQQE
HMQRHMLLERDRLMTAQQQV
AMQHNEMMR---RLQQEGSL
LGNPGAPGAVGGLLR-----
-----------SDRPSFEKP
--------------------
--------------------
--------------------
-------
>14977.m05103_BMA1.short_headers.longest_isoform.pep_
--------------------
--MVEEDETAGKTPEECRDL
GLWEVDLVYYSLYGNNKGDS
TKN-----------------
-----KRGKAYKARSDSEYK
CFEAHDGVLYRPGDHVFIEV
SQCDPYYIGTISN-------
--------------------
----------------FKMT
KRDQLSVKVTRFYRPEDVPE
DSYSLLLQDRQDDTSLNHTV
MAAMQT---RELFSSEISSI
HPICHLRGKCTIRLIKDIRT
LRECDVQSLTDIFFS-LVSF
DPNN----------------
--------------------
--SRLASVQGEIRVGGAKLP
PMERCSAVDEPD------RD
ELQWRPGYINEESEHVYKRA
TRSFRMFAMVRNEQI--TQM
ERDFRTGDLCMHDAIITLHK
CDYNVNYAIEAMNKNDEHML
KVANFMSVDDAKKFARGIKT
YGKNFLKIKKELLPHHRR--
--------------------
-------------------D
ELVQFYYGWKKTRDATRPKP
LARQRNT-------------
--------------------
--ATATHRKPKGNQLKASRP
GS-----------TDLADYA
SASETEMEELENDGRAAAYA
CHHCYTSKSKDWHHSGRE-R
QLLCTECRVFYKKYGQLRPV
DRPST--------VPPSLYK
PRS--------PEGND-DEE
QGVRTRANKKERRGTSLEVD
KKGISSPNDSETTKQRNGKR
KRNHAQNNEYVNGTAKKRFV
KGEKE-----------DEHT
NVHENEPSVSSEVHTSDNSL
NIGKG---DEREASAGPE--
------------------SI
SASLKVVGVDEEGKHYQEPI
NTSICVEKGGPNVEIQ----
--------------------
--------------------
-------------TSATSPS
ANAAISELSSASGTAYNEVE
EAVEIATEQ-----------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--PSTSFVKPIDRTPPDEMK
TEEEDSDD------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
---------GYWTVNDTVAE
TTKNALLVRVIDRRCGQMCA
RTDLAFRM-------KPGSE
WDKKREARSAVKNHINNAHK
KPNETFPTPVTVPKLPSAQL
ASLSGTPN------------
--------------------
---VEAFMGGRVPMNGTAVS
GLPGMFPGMPDPRFG-FLTP
QQQYAIAVEQQVFQKQMEQQ
LRAHQLEMIRNGANG-----
--------------------
-----TVTTGSTVAAVRDSP
SRGGTAATAVSAHGFPPNIL
PPP-----------------
----FHNFGMDPRALAALMH
N---PQLGSQFGIGIDSHTA
AMMSALEQRNLEQRMLSMAS
MEMLAPGGIPVSQAPQSHLH
PHAAAMMQHAAATHPGDALQ
LQQLLAMSAAAQ--------
-------AQAQRPFLEQNAL
LQMTMM--N-----------
--------------------
--------------------
--------------------
-PFNNELGSRIVNPGSLNSD
MMRR---------LQQEGGF
ASAQRP--------------
--------------------
--------------------
--------------------
--------------------
-------
>C04A2.3a_wormpep204.longest_isoform.pep_
MSRFDSQCSSEDVNKEDECV
PSSSEDSQDGVSSPMENDDE
PEFSQKHYDIEPCYYSLTGK
SDR-----------------
----NCRGIVYRYRQDSDLK
GFQSHDGTLYRLRDSVFVEV
SQNEPYVIAAICG-------
--------------------
----------------FKYT
KRDHVVVKLTRYFRADDIPE
ISLNLMKQERAELEINPHLC
PQSLNR----ELFNSELQIT
QPVSCLRGKCIVEYVKDVRH
ARTVADFSLDNDTFFFCLHY
NQDS----------------
--------------------
--TKLASTHYAIRVGTSFQA
TLP---PMAECSVGDDSDRD
ELLYRPNSIESGEEEDYIKL
ARCYRTYTLSGNHMLDSQKN
ARSLQVSDLLMDEAIIQLHR
SGYKIDDALSELNANDIILT
TDVDNMTQDDAKKFAKGIKQ
LGKNFSRIHRELLPHHSR--
--------------------
-------------------E
QLVSYYYLWKKTPEATKPKQ
AARRVNP-------------
--------------------
----TSIKRPTKEKVKASRP
TS-----------TEYLDFD
SASESDVENNGPSGR----A
CHHCYGAESKDWHHAN---G
LLLCTDCRLHYKKYGQLRQI
ANRPS-------QVPACLFK
RSNS------DEEESGVRTR
AGKKEQRRRTPSSMSETPDR
RSPSTVSNGAPNLTAEETPT
KKLNGSVKRAPKRPLHNGVI
NNVEK--------------S
NSSEEPASPTTPPPTLTNGL
TNGHG---PESSTPNGET--
-------------ISKRMKV
EPSYDDDDDEEEGKMTIDEG
DDDPMPVLNGFKKEES----
--------------------
--------------------
--------VEEIKLELNGTI
KKENGVETDPTTPTCSMEAE
NEVCETPAVVS---------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
-VEIRDETNGETNSDLKDDE
NVEPDSPE------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
---------DTFELGSNVEF
ETKNAMFVRSIVRSCGPRCA
RTDLIFKIK------VGGVW
EKSIKEKEERKKVHLQNQRI
QDSEKVAIQQNQIKKEQQQS
QPTPQQIH------------
--------------------
--QQQAQQNAQHLQQLQQAV
MLGHLPPEVLRQMMPPQFGV
DPTAILMQQMMAGQQSQGVN
AAFQHQMALQQQLEAHQ---
VQFQLMMAHQHQQKMIAEQQ
QQQRHAAAQQLREREQREQR
ERERERQHQQQAQQALHQQQ
Q----------QHAAAAANQ
LNPAMMQMMALMANSAASQQ
D----IARLMEMAAQQQQQQ
QQAAQAQAQRDQERERRERE
AREREAAREREREQAAREAA
ARDQAAREHAQAVQAAAAAA
QQAQALTPDMQH--------
--------MHLLQQLMLNPA
LMMQLQQAQ-----------
--------------------
--------------------
----------AQQQQQQPQV
TNPLQMLQHGMAAQSANQAE
MMRR---------IHPEPAM
RPQHQ---------------
--------------------
--------------------
--------------------
--------------------
-------
>Minc14509a_MiV1A1.short_header.longest_isoform_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
----------------MFIY
KYILINNGKCSVQLVKDLRT
ALAEIDFGDDNAFFH-CLNY
NQES----------------
--------------------
--GRLASCQMSIKVGSAYQA
NIP---SCSSSTLSDDPDRD
ELLYRPGYLCPETEDKYVKM
ARTFRTFSLMNNKRI--TIL
EKSARTGDLLLDDAVVALHR
SGYSVMDAINTMQAIDTHLT
TDSSFMNADDVKKFGRGIKQ
YGKNFNKINKDLLGNHRR--
--------------------
-------------------E
QLIAFYYLWKKSANATRPKP
LGNSKRTQVSVASFSRRART
TANSTFNGIGNGGKNAFSTA
EGGTPPPSTDSGEQVEASTK
SSNGGGENSISPPDELQDYA
SASEAETEQLDSQSGGVGRA
CHHCFSSKSVDWHHAGHDRL
LLMCTECRIFYKRYGQLRPV
ERPST--------VPPCLLM
PANTTTSRQDSEEEDENEEP
FNGRSNRLRTRGGGSRLLPQ
RTPSSLDLLESGGEQRLRGT
PQKLEEEQQRRSTPLRNSAG
KTGRK-----RGGNNNRGGG
DSLYDESTPTPPKGKRSKKG
NIATTTTTTTSPPSSLPSN-
-----------AADDSRTPS
PPTTTINVVKEDNEQNENSN
NNTRKRISKKEKLKQE----
--------------------
--------------------
-----KINKDKIESSDDNSA
KKVKLERADSHAGVVTPQPA
TENTTTITLPSPIIETCITL
KEEQIADDLPSKQQKKSEKH
SKLNIETSQVSSPKNS----
--------------------
--------------------
--------------------
PPIGAATIISRKPVAKVEPL
ETNKEEIKNEIIEQIQQQTS
QQQEEEVESCKVLGGGGGGG
GEEEEPSNNTTIICVVSSDD
EEGDEKGSESDENKKEWEQD
CGPLGEVDSTEIYRTVEGKK
DFKGN---------------
--------------------
--------------------
--------LIPIESRTILER
RLKRISGLTCARTDIAYLES
PERARHNLQKRERERLKKEQ
ERAAKQQHKQMNVATIPVVQ
PLKKMEMPAEFGGQQHQQQQ
QPSLVYLPNGATIPCVSGNN
QQQQQLAALHHPMILNGTLL
PGNNIVNIPGGGPILSQFNS
FAAPQQSN------------
-----------EVSSTFSSV
ASSTIPSASTTLPASTSLTT
PQAFQQPQQQQHQLVAIGGN
HHQLINNQQNLQQPSALTPL
ANQPPANAAALFHQQQQQQQ
ENAIFMQMLMGSDPRLIQQL
QTMFHMQQQQQQHQQLPFAP
PSASAASTATTNTASAPIPT
PN--IVAQQQQQMLQMQQMQ
ILFGLQQQQEQKQQLEQYQR
QQQQQKNAQQQQQQRAGPVA
STSTNIPQQQHILNGYHQNN
QQHKLSGVGNNNNIVNPSQH
FSHHSVAQHKSKKEAASLKN
QHQQQNQQFSHQQQ------
------SNDALMKQLFYGAQ
HQQPPPNIGAANNAQQRAVM
F-------------------
--------------------
----------AALQQQQHQR
NNNFQQQQQQQQQSSMLAAE
MEAICNMFQQPQNNNSASIN
IQPQQLQEMLGVLAAGGAG-
--------LSQQDQRVLEEQ
IRPFFISQ------------
--------------------
--------------------
-------
