>Smp_146360_Smansoni.v4h.longest_isoform.pep_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
-----------MSRVLRLDG
DLLRAT--------------
--------------------
--------------------
--------------------
--------------------
--------------------
---VNELSK--VTELKGV-P
FSRFTELNRIIKGFRTQEMT
ILSGNTGVGKTTFMCEYSLD
LAEQG---------------
--------------------
VPTLWGSFEMPLRKVCKTLI
QQFA----------------
-------GEPLDPPIP----
---SRIAEWARMFS------
-ENVPIYFMNLHGAQSLTEV
LKTMEVGVKDSGVEHIVIDN
LQFLLGAG------------
---------DGAFIERFQRQ
DHFIEKLRAFATEKGTHVTI
VAHPRKEEIGRLLSINSLYG
---------GGKISQEADNI
MFLQMDS----STAIP-KKY
IQVVKNRYDG-TLGCMDLNF
RKDRLSFRPRPRELVIPTKA
TTFPRIVGYD----------
--------------------
---
>Sjc_0309860_Sjaponicum_Proteins.v4.0.short_header.pep_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------AGWRSA
KITVN---------------
--------------------
--------------------
--------------------
--------------------
--------------------
-----ELSK--VTELKGI-P
FSRFTELNRIFKGFRTHELT
VLSGNTGVGKTTFMCEYSLD
LAEQG---------------
--------------------
VPTLWGSFETPLRKVCKTLV
QQFA----------------
-------GEPLDPPIP----
---SRITDWAHMFS------
-QNVPMYFMNLHGAQSVTEV
LKTMEIGVKDVGVEHIIIDN
IQFVLGAD------------
---------DSAFVERFQRQ
DRFVQKLRAFATEKGAHITV
VAHPRKEEIGRLLTINSLYG
---------GGKISQEADNI
MLIQVDS----SISIP-KKY
VQVVKNRYDG-TLGCMDLNF
RKDRLSYRPRARELVIPTKA
TTFPRVVGYD----------
--------------------
---
>F46G11.1_wormpep204.longest_isoform.pep_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
-MEDELDSDLYDRVSYLNLM
DKID---TRKKTSKVG----
-----------KFRDDSDAP
SPRLDASEAMSAPPDPDIKR
YWDS----------------
--------------------
------SLDITD---LSGHD
FTIFKQLQGMLGIE--NISF
ETLARFNVRVQTDTYGQPAI
LFPRYRGMTSRLRIPMGLKL
IRKVGDRMEKENYPLPDETS
-VRQKFNGVFGLHMATLSDR
SVVITTNERDALAIYEATKA
LVFALPHG-EILDPLVLPYL
EEFDKIYLWFP--VQHVSYA
KDWGSALNTLKCLLVKNEER
P-IELVRNGDHRLIRNSLSN
SVVRMRERGFRSMTDLDMRE
GIRSDLLNS--TNRVVGFGQ
WKRFAVLNKYLGGLRPGEMT
VLTGGTGNGKTTFLCEYSLD
LFTQG---------------
--------------------
VRTLFCSFEMPEKKILHWML
VQYAGYDDLVFFLFPSHLRS
LARTNSYKNGIKLPLHRVE-
-YSNSINSWLDRFERS----
SSALTMLDSEEFMEKSINEI
VRAIRIHVENSGIQHVVIDN
LQFLINQGMMADE-------
---------KSSGLDRFHLQ
DRFVGYMRQLATQNQIHITM
VVHPRKTDGDTEIDVQHFGG
---------SARVTQEADNV
IAIQRKRDD--RDRSKFRKF
LYILKNRYYGRRVESDQLEM
VFNPSTYSHTVVEFPNVIIQ
FYFLNIFFCFFLSPYYADT-
--------------------
---
>Minc05866_MiV1A1.short_header.longest_isoform_
MSDEEEFEEIERIVLGLDEP
DFDLYDRVACLDMVKAHQLE
RKRRQFHSMGNLREGGGGTT
VTGEMAPTRRYQSLSEETDV
DLPGKRRQKSLDFQQKISQT
CKNSQNGQRKDYHHQAPPLR
ALSVETAGIKTEFGESSFIP
SDSKISPVLPVDNQTYKYLD
MCDCSLLPNCALGDCSPLNE
FEDDFDENKFREEKYQQISQ
KQIKEPHKRSKTRPETIPKN
HHLRPPQHFYGSNLSSPGPS
SSTQSPILGHSPSLSATSEA
STESAPASFLFRLPLTISKV
NRGIADCEVRAGSSCGSRKC
QKSIKAIPIDFTEMGVFIAP
SSDTDPDEAFVVVERRRLFD
DSGAGSEQQSSITAAISPAP
TRQS---PAAKNTNSVENLL
QHSGGVQNNFSEGKELATTT
PLGVDTQRAVASSTISKTSP
LLRFA--DKTEEQNILRQKR
GVEEQAALEGIGASGGMVDP
KIRHFWSEAVDLSEIRNVED
QTEFRSLRAQLGID--KISA
ETLSQYHVRGHMDAFDQPAI
CYPRYRGPSTRNRIPNGLKV
IRRVSG--------------
-------GKLTKENYPDESS
EIVLCTNERDALAVYDASNG
IPALSLPLGERFDSTVIPYL
EDFDLIYIWFP--HIHERFA
KSYASYLNAARCYIITASLR
P-VELVHAVR----------
----VRYKGFRSVQDLRDSV
R--SEIVQS--KTKLSGLTM
WKRYALLNNYLRGFRPSEIT
ILSGGS-YGKTTFMCEYAMD
LFTQG---------------
--------------------
IRTLFCNFEMPEEKILKWMI
IQFAG---------PSHVRS
LARSRTFTTRTKVPLQQRQ-
-DHSAVEMWLDRFERT----
HSDLIIMKTEEFRDKTLKEI
ADAIREQTLACGTQHLVIDN
LQALVDMATVNID-------
---------PMTAAERTHQQ
DRFVGMLRRMANAQELHITL
VVHPVREPNEQGYYELQHIG
GP-------SAKITQEAENV
LVIQRRRET--DDRRKFRKF
LYILKNRFGGRCLEVDQIEM
LFQPSTLIHSLVEVSR----
--------------------
--------------------
---
>Minc03576_MiV1A1.short_header.longest_isoform_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
-MFFFNILNIIFTQFLVFFD
DSGAGSEQQSSITAAISPGP
TRQS---PAAKNTNSVENLL
ERSGGVQNNFSEGKELATTT
PLGVDTQRAVAS-TISKTSP
LLRFA--DKTEEQNISRQKR
GVEEQAALEGIGASGGMVDP
KIRHVWSEAVDLSEIRNVED
QTEFRSLRAQLGID--KISA
ETLSQYHVRGHMDAFDQPAI
CYPRYRGPSTRNRIPNGLKV
IRRVSG--------------
-------GKLTKENYPDESS
EIVLCTNERDALAVYDASNG
IPALSLPLGERFDSTVIPYL
EDFDLIYIWFP--HIHERFA
KSYASYLNAARCYIITASLR
P-VELVRDNRAKEVLHN-IQ
DAVRVRYKGFRSVQDLRDSV
R--GEIVQS--KTKLSGLTM
WKRYALLNNYLRGFRPSEIT
ILSGGS-YGKTTFMCEYAMD
LFTQG---------------
--------------------
IRTLFCNFEMPEEKILKWMI
IQFAG---------PSHVRS
LARSRTFTTRTKVPLQQRQ-
-DHSAVEMWLDRFERT----
HSDLIIMKTEEFRDKTLKEI
ADAIREQTLACGTQHLVIDN
LQALVDMAT-----------
--------------------
-----VNIDPMTAAERTHQQ
VVHPVREPNEQGYYELQHIG
GP-------SAKITQEAENV
LVIQRRRET--DDRRKFRKF
LYILKNRFGGRCLEVDQIEM
LFQPSTLIHSLVEVSR----
--------------------
--------------------
---
>Mh10g200708_Contig271_51441..51706_M_hapla.pep_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
------MSD--EEE------
---FEEIERIVLG-------
-------------LDEPDFD
LYDR----------------
--------------------
----VACLDMVKAHQLERKR
RQFH----------------
--------------------
--------------------
--------------------
----------------SMGN
--------------------
--------------------
--------------------
----LREGGDGG-------G
---------GGTVTTEMATK
--------------------
--------------------
--------------------
--------------------
--------------------
---
>TS_TRISPI_Contig42.SNAP.17_T_spiralis.071204.pep_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
------MRVEIDKKSSSLAR
NNIPNSLEIYGKQHTVMFLI
NNQSVMRTLCSFRELSLQIC
SCQSR--NLQIVYYLPKKYG
KSYDLAKNGMRVSKYVLSVS
PILYYLTISYRSFSKWQNRF
VFDCA--HLKSEKSFKCSTL
LFGDIANCLP----------
--DELWNDGLSV----DMLS
LKEWHELTCAFTQK--HISR
RSFQKYHVRISKDKT---AM
IFPSFTHFGEECYPVPVGVK
LVSLTDFKEIPLQAVSSPR-
-------GLFGFNLIMSISD
VVVLALSEWEAMFLFEKSGL
PVVVLPKNCGQFEN------
--------------------
-------EVAHSSLIKGLSI
Y-DYYTRSSKSKVSVPQCLA
QSLRMLHPCISPIGDLRSTV
---FDYIYR--QGVTKGIAQ
WNRFHILNSYLGGLRLGELT
IVSGPTGCGKTTFISLYSLD
LCEQLE--------------
------------------KQ
INTLWCSFEVSTARLVHVMM
QQLN----------------
-------SRKIDETIPE---
---RELEIMYNKLS------
--LLPLYFTKFNGSFEFREV
VEAIEHHVEIYDIRHVVVDN
LQFLAGAV------------
---------DQMVSDRFTVQ
DRVFAEFRRIATERNVHLTL
VVHPRKELDSGQLSLNSLYG
---------GVKASQEADNV
YVVQVKREIDALGIPKIHRY
FQILKNRRMGELEVSNRLEL
KFNHDTVSHRIVRHVDPKIN
AK------------------
--------------------
---
>TS_TRISPI_Contig2.c.SNAP.264_T_spiralis.071204.pep_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
------------MKASVKRS
TKNKVDTMMNGYSGSSDEEA
ASDSPKTVVHTVWNQSIPIN
QMSLPKLTRLRQLLSLRDST
FAKYNVRATANGDGLIFPRY
TDRLERVGVRQLKPSGLKIF
RLTENRNQPGIIEETIPDSS
TYVGFFGYHLVKSVDVETVL
LFNEADALSVHQAAGKVALA
VHDQYGPFQNQLLSLLTELI
HVIIWPPPEKYNRGKLLAKS
LTSTNCHLISPASCKNMRAA
DALAL--PGKGRQLITGVIK
ACERVEEKSLSTFDKLKELT
KEYYYGYGSVSGICKVSEIK
LWSRFSALNNYLKGFRLGEL
TLIGGGSACGKKTFLAEYAL
DICCQNVPTLWCCLELPVGR
LTATLVEQDAFFEE--NTNQ
RSFDYWYEEISRLPMYFAKF
DKVGFTKLKDIVEVIDRLAA
SKEVQHIVIDDVTALQEWTL
-AKNGYDLNLIFSDLRRLAQ
NRNCHITGSMLLSKFQNSKE
NNNADTLQQNAVNMQAMKEA
DNVLVICTKKLAQDITDVEH
ENFLQIWKTRRGGDLVLSNY
I-EMNFNRMTKCYTLTVGDR
ALPEGTWRLCILPLVLVAVI
SIVVNQLYVPLPDRFAEREK
MQIIETVARVLYMYPGKWLE
LFSTKWQLRWTRLVLNSLAW
LCSYAYRSTEPQNVHIHTIM
LDDVAARVYIPDKVDTDAAI
VYIHGGGFVLLNVDSYDLIT
RHLAKLTNMITVSIEYRLAP
EHKFPAAIDDCERAIVYFLR
HAHKLYSINSDKVVLVGDSA
GGNLAAVVTQRLRNKRIRPV
LKFVDFMTPSYQMAYRLYGR
TALPDPESIVREIGIVIKKN
FSPMHVRIYSWMLVYLGLDV
EHVPKVLRSDHVDPIRQLQL
LQAVQHDQLPPEFLDPSYYK
KP-------PPKLNNTESSE
AMHQVQS---YLLDWQVSPL
LQQDMSDLPKALVLTCEFDP
LRDEGYFYVHRLRQAGVNAS
WIHYNTGFHAMLNIHNEVPL
GRQAIQDVATFIRHNLS---
---
>TS_TRISPI_Contig2.c.SNAP.266_T_spiralis.071204.pep_
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
--------------------
------------MYVLDEIS
ELPGISASVVTVLEKMQISV
NIQTTNSTQFCLMEFVAKKT
ILRCQGGTEAAKSVKRNGKE
KEEKKANFDAWPSLFMFSSV
SIAMPADIYYKARLFRRGAC
SCVAARFVPYNKPNNTHSIS
TVFCRCCFPNSNNNNNNNRT
KSDCSCERCLAGGLSLALQD
WNALRAINCFLPRWEKQQPA
TVEDEQNSCVLERTELRK-R
DMNELWDQSLPVSHIIRLFV
VHFVEPYNAEIGQHSQNVTD
VTLNRYNVRALPSLDG---L
IFPRYSVTLEMMGSQIRPSG
LKICRLVETINMMTVADEVL
PSVSTFNGMFGYHLVRQSDS
EVVLTLNEADAMSIFQACSK
LAVVLPDNPGHFNVEVLFLP
YLEEFTKITLWLPPEKYNRA
KQLSKKLLSNQCYLISPKAC
NNLRAAETLAIPGKGRELIN
GVIRQGEAVVHKYVDTLAML
RDPVRSFLFGYNGQTCGVVQ
WKRFSLLNSYLKGFRLGELT
LLTGPFGCGKKTFLCEYALD
LCDQN---------------
--------------------
MVTLWCGLELPSIRVVATMI
EQYAR---------------
--------------------
--YNLSTSFDDQRR------
--------ISQGSLATAIIR
LLAIEYHASAQDVQHVVIDN
ALLIHDCS------------
--------------------
SQTFTELKRFASSKNLHITA
IVHPKKVPLRILLEVENPIG
TISAYSIYSSLVGAYEADNI
LQITTHINKNQQQQCELEKY
LQIWKNRNVGELLIGCLVEM
HFDPLSKCHSLVMRKKKIRP
GCVD----------------
--------------------
---
