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Education Introduction to Nematodes Bioinformatics Workshop for Helminth Genomics Helminth.net Site Tutorial

FAQ Nematode.net FAQ NemaGene FAQ HelmCoP FAQ

Free-living Nematodes Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis japonica Caenorhabditis remanei Pristionchus pacificus Zeldia punctata

Human Parasitic Nematodes Ancylostoma ceylanicum Ancylostoma duodenale Ascaris lumbricoides Brugia malayi Loa loa Necator americanus Onchocerca volvulus Strongyloides stercoralis Trichinella spiralis Trichuris trichiura Wuchereria bancrofti

Plant Parasitic Nematodes Aphelenchoides besseyi Ditylenchus africanus Globodera pallida Globodera rostochiensis Heterodera glycines Heterodera schachtii Meloidogyne arenaria Meloidogyne artellia Meloidogyne chitwoodi Meloidogyne exigua Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Meloidogyne paranaensis Pratylenchus penetrans Pratylenchus vulnus Rodopholus similis Xiphinema index

Entomopathogenic Nematodes Heterorhabditis bacteriophora Steinernema carpocapsae

Software availability

R scripts for user-friendly DESeq2 RNA-seq differential expression analysis	A collection of R tools for running DESeq2 on your data, hosted at the Nature Protocol Exchange
R scripts for Human Microbiome Analysis Toolset	A collection of R methods for analyzing microbiome data, hosted at the Nature Protocol Exchange
modDFS.tar.bz2	A tool for determining module completeness
SMART-scan method	This is a method for analyzing human microbiota data (link to paper describing method)
NemaPath Pathways	A comparative tool for nematode enzymatic pathway analysis (LOCAL ONLY)
HelmCoP	A database for drug discovery and protein annotation (LOCAL ONLY)

Decompression Tools

Mac Compression/Decompression Tools
Various Macintosh compression tools are available from the site link below:
Mac Compression Tools

Windows Compression/Decompression Tool
The WinGZip compression/decompression tool is available from:
WinGZip home

Multi-platform Compression/Decompression Tool
The Zip/Unzip compression/decompression tools are available for many platforms. Follow this link to get to the Zip/Unzip home:
Zip/Unzip home

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