Function & Expression : species nemapath

 News
[Mar.12.2013]   New Postdoc position available!

[Feb.11.2013]   Ascaris suum microarray data now mirrored locally!

[Nov.1.2012]   NemaGene Gene Tables now available

[Nov.1.2012]   CDS for Bursaphelenchus xylophilus made available as a blastable database in NemaBLAST





SPECIES NEMAPATH ASSOCIATIONS

Instructions relevant to this page:
To view KEGG associations for any of the listed species below, simply click on the KEGGv58 viewer link, then provide an e-value cutoff to recruit alignments to the KEGG defined pathway maps. Mappings are performed using BLAST to align nematode transcriptome assembly contigs to the KEGG genes db (currently using release 58). The KO ids of the subjects hit are used to relate nematode sequences to the KEGG pathway maps. Choosing a less stringent score will be more sensitive, but can introduce false positive mappings.


last update: 09-01-11

Genomes
#Genes
NemaPath KEGGview
Brugia malayi genes
11,610
Caenorhabditis brenneri genes
30,702
Caenorhabditis briggsae genes
21,978
Caenorhabditis elegans genes
24,052
Caenorhabditis japonica genes
25,870
Caenorhabditis remanei genes
31,518
Meloidogyne hapla genes
14,421
Meloidogyne incognita genes
20,359
Necator americanus genes
19,151
Priostionchus pacificus genes
29,201
Trichinella spiralis genes
15,808
cDNA isotigs
#Isotigs
NemaPath KEGGview
Cooperia oncophora cDNA
31,302
Dictyocaulus viviparus cDNA
36,192
Necator americanus cDNA
9,692
Oesophagostomum dentatum cDNA
29,805
Ostertagia ostertagi cDNA
29,939
Teladorsagia circumcincta cDNA
33,101
Trichostrongylus colubriformis cDNA
27,412
EST contigs
#Contigs
NemaPath Kegg Data
Ancylostoma caninum
5,484
Ancylostoma ceylanicum
4,953
Caenorhabditis remanei
12,334
Dirofilaria immitis
2,534
Ditylenchus africanus
5,214
Globodera pallida
3,406
Globodera rostochiensis
6,448
Haemonchus contortus
9,842
Heterodera glycines
12,313
Heterodera schachtii
1,600
Heterorhabditis bacteriophora
7,854
Meloidogyne chitwoodi
5,880
Meloidogyne hapla
11,193
Meloidogyne incognita
9,107
Meloidogyne javanica
5,172
Meloidogyne paranaensis
2,263
Onchocerca flexuosa
1,665
Ostertagia ostertagi
4,659
Parastrongyloides trichosuri
4,934
Pristionchus pacificus
2,654
Pristionchus pacificus genes
29,201
Radopholus similis
4,004
Steinernema carpocapsae
1,592
Strongyloides ratti
5,237
Strongyloides stercoralis
3,479
Toxocara canis
2135
Trichinella spiralis
5,958
Trichuris muris
3,735
Trichuris vulpis
1,690
Xiphinema index
5,485
Zeldia punctata
202


 
  Nematode.net v3.0           Copyright Statement
  User support forum Nematode.net User Support
Webmaster       nematode@genome.wustl.edu
The Genome Institute Washington University School of Medicine