Home : chokepoint ftp

Amazon awards research credit to support!

[July.10.2018] is now hosted on Amazon!

Bioinformatics Workshop for Helminth Genomics (2015) class materials now freely available!

NTDs get some well deserved coverage outside the usual channels: Financial Times Special Report: Neglected Tropical Diseases

Chokepoint data files
Last update: 04/13/2011

ListOfChokePoints_ParaNem - A list of the ECs of the chokepoints found in the ParaNem group

ListOfChokePoints_common_nem - A list of the ECs of the chokepoints found in the CommNem group

ListOfChokePoints_union_nem - A list of the ECs of the chokepoints found in the UniNem group

The following contain the FASTA files for chokepoints in each of the different species we studied:

Bma_ECs_genename_chokepoints_CommNem.fasta - Brugia malayi
Cbre_ECs_genename_chokepoints_CommNem.fasta - Caenorhabditis brenneri
Cbri_ECs_genename_chokepoints_CommNem.fasta - Caenorhabditis briggsae
Cel_ECs_genename_chokepoints_CommNem.fasta - Caenorhabditis elegans
Cjap_ECs_genename_chokepoints_CommNem.fasta - Caenorhabditis japonica
Crem_ECs_genename_chokepoints_CommNem.fasta - Caenorhabditis remanei
Mhap_ECs_genename_chokepoints_CommNem.fasta - Meloidogyne hapla
Minc_ECs_genename_chokepoints_CommNem.fasta - Meloidogyne incognita
Ppn_ECs_genename_chokepoints_CommNem.fasta - Pristionchus pacificus
Tsp_ECs_genename_chokepoints_CommNem.fasta - Trichinella spiralis

Bma_ECs_genename_chokepoints_UniNem.fasta - Brugia malayi
Cbre_ECs_genename_chokepoints_UniNem.fasta - Caenorhabditis brenneri
Cbri_ECs_genename_chokepoints_UniNem.fasta - Caenorhabditis briggsae
Cel_ECs_genename_chokepoints_UniNem.fasta - Caenorhabditis elegans
Cjap_ECs_genename_chokepoints_UniNem.fasta - Caenorhabditis japonica
Crem_ECs_genename_chokepoints_UniNem.fasta - Caenorhabditis remanei
Mhap_ECs_genename_chokepoints_UniNem.fasta - Meloidogyne hapla
Minc_ECs_genename_chokepoints_UniNem.fasta - Meloidogyne incognita
Ppn_ECs_genename_chokepoints_UniNem.fasta - Pristionchus pacificus
Tsp_ECs_genename_chokepoints_UniNem.fasta - Trichinella spiralis v4.0(AWS)    Copyright Statement
  User support forum User Support
The Genome Institute Washington University School of Medicine