Nematode Net

NemaGene Clustering
For more information on NemaGene clusters click here.
R. similis and G. rostochiensis have been re-clustered.
The older clustering results can be downloaded from the FTP page.

Search Examples:
EST sample name:	Enter Washington University name for an EST sequenced from the selected species. The result will display the contig in which the EST is a member.	pa29e12.y1
Putative ID:	Use this field to search putative IDs assigned to our contigs by BLAST against GenBank's non-redundant protein database. Entries may be words or phrases.	UBIQUITIN
NemaGene contig ID:	Search by Washington University contig name.	AC05240
NemaGene cluster ID:	Search by Washington University cluster name:	AC01000.cl

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Species Database:

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HTML Output

Date: 1/11/2007

Active NemaGene Clusters	# of Clusters	# of Contigs	# of ESTs	Cluster ID Prefix
Ancylostoma caninum	4020	5484	9286	AC
Ancylostoma ceylanicum	3369	4953	10,588	AE
Ascaris suum	9949	17989	39162	AS
Brugia malayi	1310	1609	3742	BM
Caenorhabditis remanei	9560	12334	21503	CR
Dirofilaria immitis	1793	2534	3999	DI
Ditylenchus africanus	3808	5214	6528	DA
Globodera pallida	2257	2973	4389	GP
Globodera rostochiensis	6448	9482	15687	GR
Haemonchus contortus	5058	9842	22152	HC
Heterodera schachtii	1555	1600	2849	HS
Heterodera glycines	1790	2026	4307	HG
Meloidogyne arenaria	3241	3372	5019	MA
Meloidogyne chitwoodi	3578	5880	12187	MC
Meloidogyne hapla	6667	11193	24331	MH
Meloidogyne incognita	5598	9107	19957	MI
Meloidogyne javanica	4827	5172	7594	MJ
Meloidogyne paranaensis	2156	2263	3710	MP
Nippostrongylus brasiliensis	2576	3949	7931	NB
Onchocerca flexuosa	1476	1665	2124	OF
Ostertagia ostertagi	4023	4831	7090	OS
Parastrongyloides trichosuri	4324	4934	7914	PT
Pratylenchus penetrans	420	488	1928	PE
Pristionchus pacificus	2603	2654	4979	PP
Radopholus similis	4004	5551	6982	RS
Strongyloides ratti	4152	5237	14703	SR
Strongyloides stercoralis	3311	3479	10908	SS
Toxocara Canis	1975	2135	4902	TX
Trichinella spiralis	3453	5958	10,130	TS
Trichuris muris	2650	3735	7170	TM
Trichuris vulpis	1224	1690	3062	TV
Xiphinema index	5400	5485	9344	XI
Zeldia punctata	195	202	378	ZP