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NemaGene : nemablast vs reads

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Free-living Nematodes Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis japonica Caenorhabditis remanei Pristionchus pacificus Zeldia punctata

Human Parasitic Nematodes Ancylostoma ceylanicum Ancylostoma duodenale Ascaris lumbricoides Brugia malayi Loa loa Necator americanus Onchocerca volvulus Strongyloides stercoralis Trichinella spiralis Trichuris trichiura Wuchereria bancrofti

Plant Parasitic Nematodes Aphelenchoides besseyi Ditylenchus africanus Globodera pallida Globodera rostochiensis Heterodera glycines Heterodera schachtii Meloidogyne arenaria Meloidogyne artellia Meloidogyne chitwoodi Meloidogyne exigua Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Meloidogyne paranaensis Pratylenchus penetrans Pratylenchus vulnus Rodopholus similis Xiphinema index

Entomopathogenic Nematodes Heterorhabditis bacteriophora Steinernema carpocapsae

NemaBLAST versus reads grouped by library:

Please enter your sequence here (must be in FASTA format)

Reset Entire Page

Select all the species that you wish to include in your custom database individually or by clade from the menu below. You will be prompted on the next page to specify which library(s) per selected species you want to include (all libraries for each selected species will be checked by default). Be sure to enter your query in fasta format in the window above. Once databases have been chosen and your query is entered, press the Build BLAST Query Page button to continue.

Species Selection

Clade Selection

Nem-No-Ele Database*

*NEM-NO-ELE: This database contains all known nematode EST sequences from NCBI's GenBank from all species except C. elegans. This database is only current through December, 2006. Including this database in your query will allow you to BLAST some data not sequenced at the GSC - but may also cause duplications to be found for GSC sequence (i.e. our internal databases and Nem-No-Ele may have data in common).

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