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SPECIES NEMAPATH ASSOCIATIONS

Instructions relevant to this page:
To view KEGG release 68.0 associations for any of the listed species below, simply click on the View in NemaPath link, then provide an e-value cutoff to recruit alignments to the KEGG defined pathway maps. Mappings are performed using BLAST to align genes or transcripts to the KEGG genes db (the ko annotated only fraction of release 68.0). The KO ids of the subjects hit are used to relate nematode sequences to the KEGG pathway maps. Choosing a less stringent score will be more sensitive, but can introduce false positive mappings.

The upper section provides links to NemaPath views for species with known genesets, and the lower section provides links for species that only have transcript data (transcript assembly contigs based on 454 cDNA reads or sanger EST data)


last update: 01-30-14

Genomes
#Genes
Map view
Angiostrongylus cantonensis
14,520
Angiostrongylus costaricensis
13,417
Anisakis simplex
21,606
Ascaris lumbricoides
23,604
Brugia malayi
17,989
Brugia pahangi
14,747
Bursaphelenchus xylophilus
18,074
Caenorhabditis angaria
33,934
Caenorhabditis brenneri
30,779
Caenorhabditis briggsae
21,961
Caenorhabditis elegans
26,248
Caenorhabditis japonica
36,034
Caenorhabditis remanei
31,450
Caenorhabditis sp11
Caenorhabditis sp5
46,280
Cylicostephanus goldi
14,438
Dictyocaulus viviparus
13,514
Dirofilaria immitis
12,857
Elaeophora elaphi
10,761
Enterobius vermicularis
13,773
Globodera pallida
16,417
Gongylonema pulchrum
Haemonchus contortus
24,775
Haemonchus placei
Heligmosomoides polygyrus
Heterorhabditis bacteriophora
20,964
Loa loa
15,445
Meloidogyne hapla
14,420
Meloidogyne incognita
19,212
Necator americanus
19,153
Nippostrongylus brasiliensis
Onchocerca flexuosa
35,229
Onchocerca ochengi
12,914
Onchocerca volvulus
11,300
Parascaris equorum
14,592
Parastrongyloides trichosuri
16,545
Pratylenchus penetrans
Pristionchus pacificus
24,217
Soboliphyme baturini
13,611
Strongyloides papillosus
14,797
Strongyloides ratti
19,180
Strongyloides stercoralis
11,244
Strongyloides venezuelensis
13,578
Strongylus vulgaris
Syphacia muris
11,214
Teladorsagia circumcincta
25,567
Thelazia callipaeda
10,940
Toxocara canis
20,269
Trichinella nativa
10,651
Trichinella spiralis
16,380
Trichuris muris
8,944
Trichuris suis
9,839
Trichuris trichiura
9,856
Wuchereria bancrofti
13,134
 
Genomes
#Transcripts
Map view
Heterodera schachtii
1,592
Meloidogyne chitwoodi
5,858
Meloidogyne javanica
5,160
Meloidogyne paranaensis
2,252
Ostertagia ostertagi
34,792
Trichostrongylus colubriformis
27,593
Trichuris_vulpis
1,680
Xiphinema index
5,448
Zeldia punctata
202


 
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