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NemaGene : nemabrowser

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Free-living Nematodes Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis japonica Caenorhabditis remanei Pristionchus pacificus Zeldia punctata

Human Parasitic Nematodes Ancylostoma ceylanicum Ancylostoma duodenale Ascaris lumbricoides Brugia malayi Loa loa Necator americanus Onchocerca volvulus Strongyloides stercoralis Trichinella spiralis Trichuris trichiura Wuchereria bancrofti

Plant Parasitic Nematodes Aphelenchoides besseyi Ditylenchus africanus Globodera pallida Globodera rostochiensis Heterodera glycines Heterodera schachtii Meloidogyne arenaria Meloidogyne artellia Meloidogyne chitwoodi Meloidogyne exigua Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Meloidogyne paranaensis Pratylenchus penetrans Pratylenchus vulnus Rodopholus similis Xiphinema index

Entomopathogenic Nematodes Heterorhabditis bacteriophora Steinernema carpocapsae

NemaBrowse

NemaBrowse is a collection of nematode genomes annotated with gene predictions and displayed using the GBrowse interface. Gene names are those assigned by the various gene calling mechanisms employed during gene prediction and may be subject to change. Minimal annotation is made available in the gene list using either final gene product information as annotated by the BER pipeline, or information derived from WU-BLAST mappings to NR using a post-alignment cutoff of 35 bits + 55% identity.

Annotated genomes:
(last updated 6-7-17)


Project	Reference	Species information	Gene prediction method	GBrowse annotations
Ancylostoma caninum	PMID:18082904	A.caninum TaxBrowser at NCBI	MAKER with BER annotation	Gene list
Ancylostoma ceylanicum	PMID:25730766	A.ceylanicum TaxBrowser at NCBI	MAKER with BER annotation	Gene list
Ancylostoma duodenale	unpublished (Assembly and annotations produced by MGI as part of the Helminth Genome Initiative)	A.duodenale TaxBrowser at NCBI	MAKER with BER annotation	Gene list
Dictyocaulus viviparus	PMID:26856411	D.viviparus TaxBrowser at NCBI	MAKER with BER annotation	Gene list
Necator americanus	PMID:24441737	N.americanus TaxBrowser at NCBI	MAKER with BER annotation	Gene list
Oesophagostomum dentatum	unpublished (Assembly and annotations produced by MGI as part of the Helminth Genome Initiative)	O.dentatum TaxBrowser at NCBI	MAKER with BER annotation	Gene list
Onchocerca volvulus	PMID:27869792	O.volvulus TaxBrowser at NCBI	Genes annotated as part of the Helminth Genome Initiative	Gene list
Teladorsagia circumcincta	in press (PLOS Genetics, as of June 2017)	T.circumcincta TaxBrowser at NCBI	MAKER with BER annotation	Gene list
Trichinella spiralis	PMID:21336279	T.spiralis TaxBrowser at NCBI	A modified version of the Ensembl Analysis Pipeline, eannot, fgenesh, and the SNAP denovo gene finder with BER annotation	Gene list
Trichuris suis	PMID:24929829	T.suis TaxBrowser at NCBI	MAKER	Gene list

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