Transcript Assembly Data Files
Worm cDNA assemblies generated from 454 (and sanger reads when available) are made available on this page. Isogroups refer to gene loci and isotigs refer to alternatively spliced isoforms of genes. These assemblies are typically generated using the Newbler cDNA assembler (Roche Applied Science ). Isogroup membership files and read membership files are generated by local perl scripts that parse the ace format file generated by the Newbler assembler. Click the symbol to expand rows to show available assembly information for each species.
Last update: 08/04/2011
Ancylostoma caninum
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Data availability pending
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Assembly input
Assembly stats
Stage info
Sanger: 0 454: 1,483,002 Illumina: 0
Isogroups: 19,277 Isotigs: 29,448 Proteins: 36,626
Infective L3: 474,249 Serum stimulated L3: 458,249 Female: 277,319 Male: 272,668
Cooperia oncophora
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Assembly input
Assembly stats
Stage info
Sanger: 0 454: 1,319,363 Illumina: 0
Isogroups: -- Isotigs: 30,025 Proteins: 29,903
Female: 334,082 Male: 316,018 L3: 689,580
Dictyocaulus viviparus
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Assembly input
Assembly stats
Stage info
Sanger: 0 454: 1,330,579 Illumina: 0
Isogroups: 20,571 Isotigs: 36,192 Proteins: 36,636
Adult: 95,637 Egg: 59,637 Female: 276,270 Male: 257,940 L1: 277,558 L3: 324,316 L5: 180,450
Heterorhabditis bacteriophora
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Assembly input
Assembly stats
Stage info
Sanger: 0 454: 580,165 Illumina: 0
Isogroups: 7,320 Isotigs: 7,320 Proteins: 7,857
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Necator americanus
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Assembly input
Assembly stats
Stage info
Sanger: 961 454: 507,397 Illumina: 0
Isogroups: 9,262 Isotigs: 9,692 Proteins: 9,681
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Oesophagostomum dentatum
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Assembly input
Assembly stats
Stage info
Sanger: 0 454: 1,268,664 Illumina: 0
Isogroups: 16,885 Isotigs: 29,805 Proteins: 30,024
Female: 236,777 Male: 312,547 L2: 206,652 L3: 341,745 L4: 312,696
Ostertagia ostertagi
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Assembly input
Assembly stats
Stage info
Sanger: 6,558 454: 1,596,628 Illumina: 0
Isogroups: -- Isotigs: 34,871 Proteins: 34,792
L3: 1,291,583 L4: 306,549
Teladorsagia circumcincta
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Assembly input
Assembly stats
Stage info
Sanger: 0 454: 885,913 Illumina: 0
Isogroups: 30,118 Isotigs: 33,101 Proteins: 33,124
Adult: 885,913
Trichostrongylus colubriformis
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Assembly input
Assembly stats
Stage info
Sanger: 0 454: 2,399,700 Illumina: 0
Isogroups: 20,214 Isotigs: 27,412 Proteins: 27,593
Female: 1,337,592 Male: 1,077,063