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Nematode.net Data Download - Retrieve data referenced in publication and/or other generally useful resources
Species Publication Description Data
Acanthocheilonema viteae Endosymbiont DNA in Endobacteria-Free Filarial Nematodes Indicates Ancient Horizontal Genetic Transfer Wolbachia endosymbiont data files link
Ancylostoma caninum   Gene annotations (10-16-2006) link
Ancylostoma caninum   Ancylostoma caninum genome newbler assembly June 2010 link
Ancylostoma caninum   Sanger EST contigs & clusters link
Ancylostoma caninum   Transcript assembly link
Ancylostoma caninum NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Ancylostoma caninum Identification and characterization of alternative splicing in parasitic nematode transcriptomes Transcriptome assembly translation and annotation link
Ancylostoma ceylanicum Improving eukaryotic genome annotation using single molecule mRNA sequencing Improved annotation using PacBio cDNA data of A.ceylanicum PRJNA72583 link
Ancylostoma ceylanicum Improving eukaryotic genome annotation using single molecule mRNA sequencing Original annotation of A.ceylanicum PRJNA72583 (w/out benefit of PacBio cDNA) link
Ancylostoma ceylanicum   Sanger EST contigs & clusters link
Ancylostoma ceylanicum NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Ancylostoma ceylanicum Excretory/Secretory Proteome of Females and Males of the Hookworm Ancylostoma ceylanicum GFF file describing improved annotation of A.ceylanicum PRJNA231479 link
Ancylostoma ceylanicum Excretory/Secretory Proteome of Females and Males of the Hookworm Ancylostoma ceylanicum Protein fasta defined by improved annotation of A.ceylanicum PRJNA231479 link
Aphelenchoides besseyi   Transcript assembly fasta sequence link
Ascaris suum Gene expression analysis distinguishes tissue-specific and gender-related functions among adult Ascaris suum tissues Active module files for A.suum microarray data by cytoscape link
Ascaris suum Silencing of Germline-Expressed Genes by DNA Elimination in Somatic Cells Data files (genome & cDNA) link
Ascaris suum Small RNAs from the Germline and Embryos of Ascaris Reveal their Conservation, Divergence, and Surprising Early Expression in Nematodes Data files (genome & cDNA) link
Ascaris suum   Database of bacterial genomes from GenBank (Jan.2012) plus an Ascaris suum genomic assembly link
Ascaris suum   Geneset CDS fasta (as of 11-1-2012) link
Ascaris suum NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Ascaris suum   Sanger EST contigs & clusters link
Ascaris suum   Whole Genome Shotgun data (11-7-2006) link
Brugia malayi Targeting protein-protein interactions for parasite control Chokepoint data files link
Brugia malayi   Geneset CDS fasta (WS230) link
Brugia malayi NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Brugia malayi   Sanger EST contigs & clusters link
Brugia malayi Effects of Doxycycline on Gene Expression in Wolbachia and Brugia malayi Adult Female Worms In Vivo Wolbachia doxycycline study link
Brugia malayi Brugia malayi Excreted/Secreted Proteins at the Host/Parasite Interface: Stage- and Gender-Specific Proteomic Profiling Mass-spec confirmed protein products link
Brugia malayi The secretome of the filarial parasite, Brugia malayi: Proteomic profile of adult excretory-secretory products Mass-spec confirmed protein products link
Brugia malayi The secretome of the filarial parasite, Brugia malayi: Proteomic profile of adult excretory-secretory products Mass-spec confirmed nucleotide sequence link
Brugia malayi Stage- and Gender-specific Proteomic Analysis of Brugia malayi Excretory-Secretory Products Mass-spec confirmed protein products link
Brugia malayi Stage- and Gender-specific Proteomic Analysis of Brugia malayi Excretory-Secretory Products Mass-spec confirmed nucleotide sequence link
Bursaphelenchus xylophilus   Geneset CDS fasta (WS230) link
Caenorhabditis brenneri Targeting protein-protein interactions for parasite control Chokepoint data files link
Caenorhabditis briggsae Targeting protein-protein interactions for parasite control Chokepoint data files link
Caenorhabditis elegans Targeting protein-protein interactions for parasite control Chokepoint data files link
Caenorhabditis elegans   Geneset CDS fasta (WS230) link
Caenorhabditis elegans NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Caenorhabditis elegans   Pyrosequencing data files (5-12-2011) link
Caenorhabditis japonica Targeting protein-protein interactions for parasite control Chokepoint data files link
Caenorhabditis remanei Targeting protein-protein interactions for parasite control Chokepoint data files link
Caenorhabditis remanei   Sanger EST contigs & clusters link
Cooperia oncophora   Transcript assembly link
Cooperia oncophora Identification and characterization of alternative splicing in parasitic nematode transcriptomes Transcriptome assembly translation and annotation link
Cooperia oncophora In-Depth Proteomic and Glycomic Analysis of the Adult-Stage Cooperia oncophora Excretome/Secretome Paper summary & mass spec identification link
Dirofilaria immitis First analysis of the secretome of the canine heartworm, Dirofilaria immitis Mass-spec confirmed protein products link
Dirofilaria immitis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Dirofilaria immitis   Sanger EST contigs & clusters link
Dictyocaulus viviparus   Transcript assembly link
Dictyocaulus viviparus Identification and characterization of alternative splicing in parasitic nematode transcriptomes Transcriptome assembly translation and annotation link
Ditylenchus africanus NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Ditylenchus africanus   Sanger EST contigs & clusters link
Globodera pallida NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Globodera pallida   Sanger EST contigs & clusters link
Globodera rostochiensis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Globodera rostochiensis   Sanger EST contigs & clusters link
Haemonchus contortus NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Haemonchus contortus   Sanger EST contigs & clusters link
Heterodera glycines NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Heterodera glycines   Sanger EST contigs & clusters link
Heterodera schachtii NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Heterodera schachtii   Sanger EST contigs & clusters link
Heterorhabditis bacteriophora   Transcript assembly link
Homo sapiens   Geneset CDS fasta (GRCh37.66) link
Loa loa   Geneset CDS fasta (as of 11-1-2012) link
Meloidogyne arenaria NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne arenaria   Sanger EST contigs & clusters link
Meloidogyne chitwoodi NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne chitwoodi   Sanger EST contigs & clusters link
Meloidogyne hapla Targeting protein-protein interactions for parasite control Chokepoint data files link
Meloidogyne hapla   Geneset CDS fasta (WS230) link
Meloidogyne hapla NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne hapla   Sanger EST contigs & clusters link
Meloidogyne incognita Targeting protein-protein interactions for parasite control Chokepoint data files link
Meloidogyne incognita NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne incognita   Sanger EST contigs & clusters link
Meloidogyne javanica NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne javanica   Sanger EST contigs & clusters link
Meloidogyne paranaensis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Meloidogyne paranaensis   Sanger EST contigs & clusters link
Nacobbus aberrans   Nacobbus aberrans project page (de novo transcript assembly available) link
Necator americanus   Transcript assembly link
Necator americanus   Repeat library (fasta file) link
Necator americanus   Differential expression between IL3 & Adult stages of N.americanus link
Necator americanus Identification and characterization of alternative splicing in parasitic nematode transcriptomes Transcriptome assembly translation and annotation link
Necator americanus Comprehensive analysis of the secreted proteome of adult Necator americanus hookworms Improved annotations link
Nippostrongylus brasiliensis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Nippostrongylus brasiliensis   Sanger EST contigs & clusters link
Nippostrongylus brasiliensis Secreted proteomes of different developmental stages of the gastrointestinal nematode Nippostrongylus brasiliensis Mass spec confirmed N.brasiliensis proteins link
Oesophagostomum dentatum   Transcript assembly link
Oesophagostomum dentatum Identification and characterization of alternative splicing in parasitic nematode transcriptomes Transcriptome assembly translation and annotation link
Oesophagostomum dentatum Proteomic analysis of Oesophagostomum dentatum (Nematoda) during larval transition, and the effects of hydrolase inhibitors on development Identification of 22 unique proteins link
Oesophagostomum dentatum Proteomics elucidates key molecules involved in exsheathment in vitro in Oesophagostomum dentatum Identification of 11 proteins using mass-spec link
Onchocerca flexuosa NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Onchocerca flexuosa   Sanger EST contigs & clusters link
Onchocerca flexuosa   Transcriptome and protein files link
Onchocerca flexuosa Endosymbiont DNA in Endobacteria-Free Filarial Nematodes Indicates Ancient Horizontal Genetic Transfer Wolbachia endosymbiont data files link
Onchocerca flexuosa Identification and characterization of alternative splicing in parasitic nematode transcriptomes Transcriptome assembly translation and annotation link
Onchocerca volvulus Identification of in vivo released products of Onchocerca with diagnostic potential, and characterization of a dominant member, the OV1CF intermediate filament Mass-spec confirmed protein products link
Ostertagia ostertagi NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Ostertagia ostertagi   Sanger EST contigs & clusters link
Ostertagia ostertagi   Transcript assembly link
Ostertagia ostertagi Identification and characterization of alternative splicing in parasitic nematode transcriptomes Transcriptome assembly translation and annotation link
Parastrongyloides trichosuri NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Parastrongyloides trichosuri   Sanger EST contigs & clusters link
Pratylenchus penetrans NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Pratylenchus penetrans   Sanger EST contigs & clusters link
Pristionchus pacificus Targeting protein-protein interactions for parasite control Chokepoint data files link
Pristionchus pacificus NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Pristionchus pacificus   Sanger EST contigs & clusters link
Radopholus similis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Radopholus similis   Sanger EST contigs & clusters link
Schistosoma japonicum   Geneset CDS fasta (as of 11-1-2012) link
Schistosoma mansoni   Geneset CDS fasta (as of 11-1-2012) link
Strongyloides ratti NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Strongyloides ratti   Sanger EST contigs & clusters link
Strongyloides ratti Life cycle stage-resolved proteomic analysis of the excretome/secretome from Strongyloides ratti--identification of stage-specific proteases Identification of stage-specific proteases in S.ratti link
Strongyloides ratti Stage-specific excretory-secretory small heat shock proteins from the parasitic nematode Strongyloides ratti--putative links to host's intestinal mucosal defense system Excretory-secretory products from parasitic female worms were separated with 1-D gel electrophoresis. An 18-19kDa gel band was excised and proteins were identified by LC-MS/MS. Identified proteins included homologs of the C. elegans heat shock proteins HSP17.1 and HSP17.2. The linked file is supplemental data for the publication. link
Strongyloides stercoralis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Strongyloides stercoralis   Sanger EST contigs & clusters link
Toxocara canis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Toxocara canis   Sanger EST contigs & clusters link
Teladorsagia circumcincta   Transcript assembly link
Teladorsagia circumcincta Identification and characterization of alternative splicing in parasitic nematode transcriptomes Transcriptome assembly translation and annotation link
Trichostrongylus colubriformis   Transcript assembly link
Trichostrongylus colubriformis Identification and characterization of alternative splicing in parasitic nematode transcriptomes Transcriptome assembly translation and annotation link
Trichuris muris NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Trichuris muris   Sanger EST contigs & clusters link
Trichinella spiralis Targeting protein-protein interactions for parasite control Chokepoint data files link
Trichinella spiralis   Geneset CDS fasta (as of 11-1-2012) link
Trichinella spiralis NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Trichinella spiralis   Sanger EST contigs & clusters link
Xiphinema index NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Xiphinema index   Sanger EST contigs & clusters link
Zeldia punctata NemaPath: online exploration of KEGG-based metabolic pathways for nematodes NemaPath KEGG mappings (KEGG v46) link
Zeldia punctata   Sanger EST contigs & clusters link


Sanger EST trace FTP:

Our EST trace FTP site has been retired. To access our old collection of Sanger ESTs please
Use the links on this Sanger EST transcripts page

Note that all our original, raw ESTs are still available at GenBank

 
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