Nematode.net v4.0



SiteMap	Home Sequencing Numbers Accession IDs Species List Library Details Data Download Software Staff Collaborators & Grants Publications FAQ NemaGene NemaBLAST NemaGene Search NemaBrowse Codon Usage Tables Function & Expression Putative Function - Kegg Putative Function - GO GO Associations Transcripts - Illumina RNA-Seq Transcripts - 454 cDNA Transcripts - Sanger ESTs Microarray Alternative Splicing sncRNAs Proteomics Comparative Genomics NemaPath Pathways ModDFS Modules InDels Cross-Tissue Compara gene families Helminth Control & Prevention HelmCoP Home Search for Gene Search for Ortholog HelmCoP BLAST HelmCoP FAQ Kinome Chokepoint Lysine Deacetylases Protein-protein interactions Microbiome Interaction MGS - Indonesia & Liberia 16s - Malaysia 16s - Australia 16s - Ecuador 16s - Indonesia 16s - Liberia Links NCBI WormBase WormBase Parasite NEMBASE4 Global NTD Research Sanger Institute 50 Helminth Genomes Project (50HGP) Helminth.net Washington University The Genome Institute

Species page : Strongyloides ratti

[Apr.22.2021]

New job listing! (click for details)

[Jan.24.2019]

Amazon awards research credit to support Helminth.net!

[July.10.2018]

Nematode.net is now hosted on Amazon!

Community Nematode.net user forum

Education Introduction to Nematodes Bioinformatics Workshop for Helminth Genomics Helminth.net Site Tutorial

FAQ Nematode.net FAQ NemaGene FAQ HelmCoP FAQ

Free-living Nematodes Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans Caenorhabditis japonica Caenorhabditis remanei Pristionchus pacificus Zeldia punctata

Human Parasitic Nematodes Ancylostoma ceylanicum Ancylostoma duodenale Ascaris lumbricoides Brugia malayi Loa loa Necator americanus Onchocerca volvulus Strongyloides stercoralis Trichinella spiralis Trichuris trichiura Wuchereria bancrofti

Plant Parasitic Nematodes Aphelenchoides besseyi Ditylenchus africanus Globodera pallida Globodera rostochiensis Heterodera glycines Heterodera schachtii Meloidogyne arenaria Meloidogyne artellia Meloidogyne chitwoodi Meloidogyne exigua Meloidogyne hapla Meloidogyne incognita Meloidogyne javanica Meloidogyne paranaensis Pratylenchus penetrans Pratylenchus vulnus Rodopholus similis Xiphinema index

Entomopathogenic Nematodes Heterorhabditis bacteriophora Steinernema carpocapsae

Species

Strongyloides ratti

Image:

Photo Credit:
http://www.bio.bris.ac.uk/research/nematode/index.html

Clade:

Clade IVa

Disease:

Rat model of human afflicting Strongyloides.

Libraries:

Library links

Available cDNAs:

Sanger ESTs:

14703 reads

5237 contigs

nucleotide link

Sequencing:

The Washington University Nematode EST Project, The Genome Institute, Washington University School of Medicine, St. Louis, MO.

External Collaborators:

Mark Viney University of Bristol, Bristol, UK Mark.

Project Contact:

Makedonka Mitreva

NemaGene information:

NemaGene gene count :19,180

NemaBLAST database:

BLAST vs. reads grouped by library
BLAST vs. transcript contigs & genes

Codon usage table:

Codon Usage table

NemFam database:

NemFam search

GO Associations:

GO Associations

KEGG Associations:

NemaPath

WormBase genome:

Strongyloides ratti at WormBase

Nembase4 species page:

Strongyloides ratti species page at Nembase4

Sanger Institute genome resource:

Strongyloides ratti genome resources at the Sanger Institute

	Nematode.net v4.0(AWS) Copyright Statement
	User support forum Nematode.net User Support
Follow @nematodenet	Webmaster jmartin@wustl.edu

The Genome Institute