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NemaGene : nemablast vs reads

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NemaBLAST versus reads grouped by library:

Please enter your sequence here (must be in FASTA format)

Select all the species that you wish to include in your custom database individually or by clade from the menu below. You will be prompted on the next page to specify which library(s) per selected species you want to include (all libraries for each selected species will be checked by default). Be sure to enter your query in fasta format in the window above. Once databases have been chosen and your query is entered, press the Build BLAST Query Page button to continue.
Species Selection
Clade I
Trichinella spiralis
Trichuris vulpis
Xiphinema index

Clade III
Ascaris suum
Brugia malayi
Dirofilaria immitis
Toxocara canis

Clade IVa
Parastrongyloides trichosuri
Strongyloides ratti
Strongyloides stercoralis

Clade IVb
Globodera pallida
Globodera rostochiensis
Heterodera glycines
Heterodera schachtii
Meloidogyne arenaria
Meloidogyne chitwoodi
Meloidogyne hapla
Meloidogyne incognita
Meloidogyne javanica
Meloidogyne paranaensis
Pratylenchus penetrans
Pratylenchus vulnus
Radopholus similis
Zeldia punctata

Clade V
Ancylostoma caninum
Ancylostoma ceylanicum
Caenorhabditis japonica
Caenorhabditis remanei
Haemonchus contortus
Ostertagia ostertagi
Pristionchus pacificus
Clade Selection
Nem-No-Ele Database*

*NEM-NO-ELE: This database contains all known nematode EST sequences from NCBI's GenBank from all species except C. elegans. This database is only current through December, 2006. Including this database in your query will allow you to BLAST some data not sequenced at the GSC - but may also cause duplications to be found for GSC sequence (i.e. our internal databases and Nem-No-Ele may have data in common).

 
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